GeorgetownX: Demystifying Biomedical Big Data: A User’s Guide

• Understand how biomedical data are being generated and processed
• Learn about various biomedical big data resources (e.g. TCGA, G-DOC, UNIPROT, etc.)
• Explore and analyze genomic, transcriptomic, and proteomic data using various online analysis tools
• Make sense of big data using systems biology resources and tools
• Appreciate the value of big data in biomedical research and clinical practice (e.g. enabling precision medicine)

Week 1: Introduction and Overview of Bioinformatics Platforms and Resources

• Introduction to the Course -Interview with Bioinformatics at Georgetown University Medical Center. Dr. Robert Clarke, Dean for Research, at Georgetown University Medical Center
• Biomedical Informatics: Enabling Research and Health Care. Interview with Dr. Subha Madhavan, Director of the Innovation Center for Biomedical Informatics (ICBI) at Georgetown University
• Biomedical Big Data: Enabling Personalized Medicine. Interview with Dr. John Marshall, Chief, Hematology and Oncology, Lombardi Comprehensive Cancer Center, Georgetown University Medical Center internationally recognized medical oncologist

Week 2: Translational Research and Big Data

• Translational Research
• Translational Research Lecture, Part 1 Part I
• Translational Research Lecture, Part 2 Part II
• The Cancer Genome Atlas
• The Cancer Genome Atlas Lecture
• The Cancer Genome Atlas Demo
• The Cancer Genome Atlas Exercise
• Introduction to G-DOC
• G-DOC Lecture
• G-DOC Demo
• G-DOC Exercise

Week 3: DNA and Big Data

• DNA Copy Number
• DNA Copy Number Lecture
• DNA Copy Number Demo
• DNA Copy Number Exercise
• Genome Sequencing
• Genome Sequencing Lecture, Part 1
• Genome Sequencing Lecture, Part 2
• Genome Sequencing Demo
• Genome Sequencing Exercise

Week 4: RNA and Big Data

• Gene Expression
• Gene Expression Lecture
• Gene Expression Demo
• Gene Expression Exercise
• MicroRNA
• MicroRNA Lecture
• MicroRNA Demo
• MicroRNA Exercise

Week 5: Proteins and Big Data Part I

• Proteomics
• Protein Sequences Lecture
• Protein Interactions Lecture
• Mass Spec Proteomics, Lecture
• Proteomics Exercise

Week 6: Proteins and Big Data Part II

• Proteomics (Continued)
• Data Sharing, Metadata, Data Formats
• Ontologies
• Proteomics Demo, Part 1
• Proteomics Demo, Part 2
• Proteomics Demo, Part 3
• Proteomics Exercise

Week 7: Systems Biology and Big Data

• Systems Biology
• Systems Biology Lecture, Part 1
• Systems Biology Lecture, Part 2
• Systems Biology and Data Analysis Demo
• Systems Biology Exercise

Week 8: Perspectives from the Field and Course Conclusion

• Perspectives from the Field
• Regulatory issues Issues related Related to biomedical Biomedical big Big dataData. Sheila Zimmet, JD, Senior Associate Vice President for Regulatory Affairs, and Ashley Carver, JD, Deputy Conflicts Officer and Regulatory Affairs Associate, Georgetown University Medical Center.
• Enabling Everyone to Share and Use Public Datasets. Interview with Dr. Ben Busby, genomics Genomics outreach Outreach coordinator Coordinator at the National Center for Biotechnology Information (NCBI)
• Interview withCancer Moonshot. Dr. Jerry Lee, Deputy Director, Center for Strategic Scientific Initiatives, Office of the Director, National Cancer Institute, National Institutes of Health